dbCAN-seq: a database of CAZyme sequence and annotation

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01001
Location and strand information: 163 - 1170 (+)
Family: 1.B.14.6.2
Protein type: TC
Protein description: TonB-dependent receptor SusC

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01002
Location and strand information: 1183 - 3129 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01003
Location and strand information: 3376 - 6354 (+)
Family: GH115
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 8.1473
Protein molecular weight: 112002.33
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01004
Location and strand information: 6725 - 7591 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01005
Location and strand information: 7588 - 8253 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01006
Location and strand information: 8298 - 10379 (+)
Family: GH127
Protein type: CAZyme
Protein description: Non-reducing end beta-L-arabinofuranosidase
Protein isoelectric point: 7.3863
Protein molecular weight: 78129.93
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01007
Location and strand information: 10325 - 12118 (+)
Family: GH141
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.5936
Protein molecular weight: 66921.62
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01008
Location and strand information: 12181 - 13557 (+)
Family: 2.A.1.1.74
Protein type: TC
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01009
Location and strand information: 13541 - 15622 (+)
Family: GH78
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 4.9638
Protein molecular weight: 79569.05
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01010
Location and strand information: 15619 - 18258 (+)
Family: GH138
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 7.2146
Protein molecular weight: 99590.83
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01011
Location and strand information: 18280 - 22323 (+)
Family: GH2|CBM57|GH137
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 8.2864
Protein molecular weight: 154031.44
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01012
Location and strand information: 22648 - 25746 (+)
Family: GH2
Protein type: CAZyme
Protein description: Beta-galactosidase
Protein isoelectric point: 6.2029
Protein molecular weight: 117459.35
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01013
Location and strand information: 25758 - 28568 (+)
Family: GH2
Protein type: CAZyme
Protein description: Evolved beta-galactosidase subunit alpha
Protein isoelectric point: 6.7625
Protein molecular weight: 105621.74
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01014
Location and strand information: 28568 - 31714 (+)
Family: GH106|3.2.1.40
Protein type: CAZyme
Protein description: hypothetical protein
Protein isoelectric point: 6.513
Protein molecular weight: 118018.48
NCBI Blastp with this gene.
Protein sequence: copy AA seq

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01015
Location and strand information: 31749 - 33158 (+)
Family: null
Protein type: null
Protein description: hypothetical protein

Gene clsuter ID: MGYG000004698_22|CGC1
Gene ID: MGYG000004698_01016
Location and strand information: 33676 - 36507 (-)
Family: 1.B.42.1.8
Protein type: TC
Protein description: LPS-assembly protein LptD

Protein ID	eCAMI subfam	CAZyme substrate
MGYG000004698_01003	GH115_e2\|3.2.1.131	xylan
MGYG000004698_01006	GH127_e2\|3.2.1.-	carrageenan
MGYG000004698_01007	GH141_e0\|3.2.1.51	pectin
MGYG000004698_01009	GH78_e26\|3.2.1.40	alpha-rhamnoside
MGYG000004698_01010	GH138_e0\|3.2.1.-
MGYG000004698_01011	GH2_e49\|GH137_e0\|CBM57_e1\|3.2.1.31\|3.2.1.185	pectin\|beta-glucuronan
MGYG000004698_01012	GH2_e2\|3.2.1.23	beta-galactan
MGYG000004698_01013	GH2_e77\|3.2.1.-	pectin
MGYG000004698_01014	GH106_e13\|3.2.1.40	pectin

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CGC gene composition diagram

Gene composition table

Substrate predicted by eCAMI subfamilies is pectin

Substrate predicted by dbCAN-PUL is pectin download this fig

Genomic location

Protein ID	Protein Name	Type	Start	End	Strand	Signature
MGYG000004698_01001	TonB-dependent receptor SusC	TC	163	1170	+	1.B.14.6.2
MGYG000004698_01002	hypothetical protein	null	1183	3129	+	SusD-like_3\| SusD_RagB
MGYG000004698_01003	hypothetical protein	CAZyme	3376	6354	+	GH115
MGYG000004698_01004	hypothetical protein	null	6725	7591	+	AP_endonuc_2
MGYG000004698_01005	hypothetical protein	null	7588	8253	+	DUF3826
MGYG000004698_01006	Non-reducing end beta-L-arabinofuranosidase	CAZyme	8298	10379	+	GH127
MGYG000004698_01007	hypothetical protein	CAZyme	10325	12118	+	GH141
MGYG000004698_01008	hypothetical protein	TC	12181	13557	+	2.A.1.1.74
MGYG000004698_01009	hypothetical protein	CAZyme	13541	15622	+	GH78
MGYG000004698_01010	hypothetical protein	CAZyme	15619	18258	+	GH138
MGYG000004698_01011	Beta-galactosidase	CAZyme	18280	22323	+	GH2\| CBM57\| GH137
MGYG000004698_01012	Beta-galactosidase	CAZyme	22648	25746	+	GH2
MGYG000004698_01013	Evolved beta-galactosidase subunit alpha	CAZyme	25758	28568	+	GH2
MGYG000004698_01014	hypothetical protein	CAZyme	28568	31714	+	GH106\| 3.2.1.40
MGYG000004698_01015	hypothetical protein	null	31749	33158	+	SASA
MGYG000004698_01016	LPS-assembly protein LptD	TC	33676	36507	-	1.B.42.1.8
Protein ID	Protein Name	Type	Start	End	Strand	Signature